Configure for publications on pypi, descriptions, etc.

1 files changed, 79 insertions, 0 deletions

diff --git a/scripts/pre_import_sra_files.py b/scripts/pre_import_sra_files.py
new file mode 100644
index 000000000..df00d3ef5
--- /dev/null
+++ b/scripts/pre_import_sra_files.py
@@ -0,0 +1,79 @@
+import unicodecsv
+import datetime
+
+from django.conf import settings
+
+from ishtar_common.data_importer import Importer
+
+
+def get_year(value):
+    try:
+        for fmt in ['%d/%m/%Y', '%d/%m/%Y']:
+            return datetime.datetime.strptime(value, fmt).year
+    except:
+        pass
+
+index_list = []
+
+
+def treatment(data):
+    internal_ref = data[37].strip()
+    creation = data[34].strip()
+    reception = data[19].strip()
+    yr = get_year(creation)
+    if not yr:
+        yr = get_year(reception)
+
+    idx, year = None, None
+    if '-' in internal_ref:
+        year, y_idx = internal_ref.split('-')
+        if len(year) == 4:  # 2007-XXXX
+            try:
+                year = int(year)
+                idx = int(y_idx)
+            except ValueError:
+                pass
+    elif '.' in internal_ref:
+        year, y_idx = internal_ref.split('.')
+        if len(year) == 4:  # 2011.XXXX
+            try:
+                year = int(year)
+                idx = int(y_idx)
+            except ValueError:
+                pass
+    if not idx:
+        idx = int(internal_ref)
+    if year and year != yr:
+        yr = year
+    assert yr  # we should absolutly have a year!
+
+    external_id = "{}{}-{}".format(settings.ISHTAR_LOCAL_PREFIX, yr, idx)
+    assert (yr, external_id) not in index_list
+    index_list.append((yr, external_id))
+    return yr, idx, external_id
+
+
+new_datas = []
+with open('plouf.csv') as csv_file:
+    datas = [line for line in unicodecsv.reader(csv_file,
+                                                encoding='utf-8')]
+    for idx, data in enumerate(datas):
+        if idx < 3:
+            # headers
+            data.append('annee')
+            data.append('identifiant numerique')
+            data.append('external_id')
+            new_datas.append(data)
+            continue
+        try:
+            year, idx, external_id = treatment(data)
+            data.append(year)
+            data.append(idx)
+            data.append(external_id)
+            new_datas.append(data)
+        except Exception as e:
+            print("Line {}: {}".format(idx + 1, e))
+
+csv = Importer()._get_csv(new_datas, empty=u'')
+with open('plouf2.csv', 'w') as fle:
+    fle.write(csv.encode('utf-8'))